miRBase entry: ssc-mir-339-2

Stem-loop ssc-mir-339-2


Accession
MI0022144
Description
Sus scrofa ssc-mir-339-2 precursor miRNA

Literature search
7 open access papers mention ssc-mir-339-2
(7 sentences)

Sequence

1374 reads, 399 reads per million, 11 experiments
uaagacaaggUCCCUGUCCUCCAGGAGCUCAugguccaauagaagcauauauacaaauggcucugaggggagaucccgcuguggcu
....(((.((...((.(((((..(((((.(((......(((......)))......))))))))))))).))...))..)))....

Structure
uaag   -a  UCC  G     CA     U   ggucca   ga 
    aca  gg   CU UCCUC  GGAGC CAu      aua  a
    |||  ||   || |||||  ||||| |||      |||   
    ugu  cc   ga gggag  ucucg gua      uau  g
ucgg   cg  cua  g     --     -   aacaua   ac 


Annotation confidence Not enough data
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Genome context
chr1: 181756284-181756369 [-]

Database links

Mature ssc-miR-339

Accession MIMAT0025372
Description Sus scrofa ssc-miR-339 mature miRNA
Sequence 11 - UCCCUGUCCUCCAGGAGCUCA - 31
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  2. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100