miRBase entry: ssc-mir-452

Stem-loop ssc-mir-452


Accession
MI0022149
Description
Sus scrofa ssc-mir-452 precursor miRNA
Gene family
MIPF0000287; mir-452

Literature search
2 open access papers mention ssc-mir-452
(3 sentences)

Sequence

41 reads, 60 reads per million, 9 experiments
aagcacuuacAACUGUUUGCAGAGGAAACUGAgacuuuguaacuacaucucagucucaacugcaaagaaguaagugcuua
((((((((((...(.(((((((..((.(((((((...(((....)))))))))).))..))))))).).)))))))))).

Structure
-          AAC G       AG  A       cuu   a 
 aagcacuuac   U UUUGCAG  GA ACUGAga   ugu a
 ||||||||||   | |||||||  || |||||||   |||  
 uucgugaaug   a aaacguc  cu ugacucu   aca c
a          --a g       aa  c       ---   u 


Annotation confidence Not enough data
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Genome context
chrX: 140861113-140861192 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-452
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-452

Accession MIMAT0025374
Description Sus scrofa ssc-miR-452 mature miRNA
Sequence 11 - AACUGUUUGCAGAGGAAACUGA - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328