miRBase entry: ssc-mir-493

Stem-loop ssc-mir-493


Accession
MI0022152
Description
Sus scrofa ssc-mir-493 precursor miRNA
Gene family
MIPF0000230; mir-493

Literature search
3 open access papers mention ssc-mir-493
(8 sentences)

Sequence

1 reads, 1 reads per million, 1 experiments
ccccagggccUUGUACAUGGUAGGCUUUCAUUcauucguuugcacaugcggUGAAGGUCUACUGUGUGCCAGGcccugugcca
...((((((((.(((((((((((((((((((.....(((........)))))))))))))))))))))).)))))))).....

Structure
--ccc        U                   Ucauu   uug 
     cagggccU GUACAUGGUAGGCUUUCAU     cgu   c
     |||||||| |||||||||||||||||||     |||    
     gucccGGA CGUGUGUCAUCUGGAAGUg     gcg   a
accgu        C                   -----   uac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr7: 132069400-132069482 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ssc-mir-493
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-493-5p

Accession MIMAT0025377
Description Sus scrofa ssc-miR-493-5p mature miRNA
Sequence 11 - UUGUACAUGGUAGGCUUUCAUU - 32
Evidence experimental
Illumina [1]

Mature ssc-miR-493-3p

Accession MIMAT0025378
Description Sus scrofa ssc-miR-493-3p mature miRNA
Sequence 52 - UGAAGGUCUACUGUGUGCCAGG - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328