miRBase entry: ssc-mir-582

Stem-loop ssc-mir-582


Accession
MI0022154
Description
Sus scrofa ssc-mir-582 precursor miRNA
Gene family
MIPF0000417; mir-582

Literature search
1 open access papers mention ssc-mir-582
(1 sentences)

Sequence

26 reads, 57 reads per million, 10 experiments
cucuuugguUACAGUUGUUCAACCAGUUACUaaucuaacuaacugUAACCGGUUGAACAACUGAACCcaaagggugc
((((((((...(((((((((((((.(((((..............))))).)))))))))))))...))))))))...

Structure
---        uUA             A     Uaaucu 
   cucuuugg   CAGUUGUUCAACC GUUAC      a
   ||||||||   ||||||||||||| |||||       
   gggaaacC   GUCAACAAGUUGG CAAUg      a
cgu        CAA             C     ucaauc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr16: 41335754-41335830 [+]

Database links

Mature ssc-miR-582-3p

Accession MIMAT0025380
Description Sus scrofa ssc-miR-582-3p mature miRNA
Sequence 46 - UAACCGGUUGAACAACUGAACC - 67
Evidence experimental
Illumina [1]

Mature ssc-miR-582-5p

Accession MIMAT0037466
Description Sus scrofa ssc-miR-582-5p mature miRNA
Sequence 10 - UACAGUUGUUCAACCAGUUACU - 31
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  2. PubMed ID: 25230983
    The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
    "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
    "J Appl Genet (2015) 56:239-252