miRBase entry: ssc-mir-671

Stem-loop ssc-mir-671


Accession
MI0022155
Description
Sus scrofa ssc-mir-671 precursor miRNA
Gene family
MIPF0000358; mir-671

Literature search
5 open access papers mention ssc-mir-671
(6 sentences)

Sequence

11 reads, 13 reads per million, 6 experiments
caggaagaggAGGAAGCCCUGGAGGGGCUGGAGGugauggauguuuuccUCCGGUUCUCAGGGCUCCACCuuuuccgggc
..((((((((.(((.((((((..(((((((((((.((.......)).)))))))))))))))))))).))))))))....

Structure
--ca        A   A      GA           u  ug 
    ggaagagg GGA GCCCUG  GGGGCUGGAGG ga  g
    |||||||| ||| ||||||  ||||||||||| ||  a
    ccuuuuCC CCU CGGGAC  UCUUGGCCUcc uu  u
cggg        A   -      --           u  ug 


Annotation confidence Not enough data
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Genome context
chr18: 6286693-6286772 [-]

Database links

Mature ssc-miR-671-5p

Accession MIMAT0025381
Description Sus scrofa ssc-miR-671-5p mature miRNA
Sequence 11 - AGGAAGCCCUGGAGGGGCUGGAGG - 34
Evidence experimental
Illumina [1]

Mature ssc-miR-671-3p

Accession MIMAT0025382
Description Sus scrofa ssc-miR-671-3p mature miRNA
Sequence 50 - UCCGGUUCUCAGGGCUCCACC - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328