miRBase entry: ssc-mir-1249-2

Stem-loop ssc-mir-1249-2


Accession
MI0022159
Description
Sus scrofa ssc-mir-1249-2 precursor miRNA
Gene family
MIPF0000667; mir-1249

Literature search
2 open access papers mention ssc-mir-1249-2
(2 sentences)

Sequence

5 reads, 6 reads per million, 2 experiments
uguuugcauggggaggagggaggagaugggccaaguucccucugccuggaACGCCCUUCCCCCCCUUCUUCAccuagcgaac
.((((((..(((((((((((.((.((.((((...(((((........))))))))).)).))))))))))).))..))))))

Structure
u      au  -         a  a  u    caa     cuc 
 guuugc  gg ggaggaggg gg ga gggc   guucc   u
 ||||||  || ||||||||| || || ||||   |||||    
 caagcg  cc CUUCUUCCC CC CU CCCG   CAagg   g
-      au  A         -  C  U    ---     ucc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrUScaf1993: 9369-9450 [+]

Database links

Mature ssc-miR-1249

Accession MIMAT0025385
Description Sus scrofa ssc-miR-1249 mature miRNA
Sequence 51 - ACGCCCUUCCCCCCCUUCUUCA - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328