miRBase entry: bta-mir-378b

Stem-loop bta-mir-378b


Accession
MI0022279
Description
Bos taurus bta-mir-378b precursor miRNA
Gene family
MIPF0000168; mir-378

Literature search
24 open access papers mention bta-mir-378b
(101 sentences)

Sequence

914 reads, 286 reads per million, 67 experiments
cuggaccaccagggaaauccugauuuuguuucuuauuaaggggagguucaguauagagcaaacagcACUUGACUUGGAGUCAGAAGGCuuagguccaa
.((((((..((((.....)))).(((((((((...((((((....((((......))))......).)))))...)))).)))))......)))))).

Structure
c      accagggaaauccuga     -    uua     - --ggag    ag 
 uggacc                uuuug uuuc   uuaag g      guuc  u
 ||||||                ||||| ||||   ||||| |      ||||   
 accugg                AAGAC GAGG   AGUUC c      cgag  a
a      ----------auuCGG     U    UUC     A gacaaa    au 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr15: 30904740-30904837 [+]

Database links

Mature bta-miR-378b

Accession MIMAT0025535
Description Bos taurus bta-miR-378b mature miRNA
Sequence 67 - ACUUGACUUGGAGUCAGAAGGC - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21912509
    Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
    "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
    "Int J Biol Sci (2011) 7:1016-1026