miRBase entry: bta-mir-154c

Stem-loop bta-mir-154c


Accession
MI0022289
Description
Bos taurus bta-mir-154c precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
10 open access papers mention bta-mir-154c
(66 sentences)

Sequence

6913 reads, 79 reads per million, 64 experiments
uucgaaaggagguuguccgugauguauuugcuuuauuuguggcAGAUAUUGCACGGUUGAUCUCUuuucuucauc
...(((((((((((..(((((..(((((((((........)))))))))..)))))..)))))))))))......

Structure
---uuc           gu     au         uua 
      gaaaggagguu  ccgug  guauuugcu   u
      |||||||||||  |||||  |||||||||    
      cuuuUCUCUAG  GGCAC  UAUAGAcgg   u
cuacuu           UU     GU         ugu 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr21: 67853625-67853699 [+]
Clustered miRNAs
20 other miRNAs are < 10 kb from bta-mir-154c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-154c

Accession MIMAT0025542
Description Bos taurus bta-miR-154c mature miRNA
Sequence 44 - AGAUAUUGCACGGUUGAUCUCU - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21912509
    Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
    "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
    "Int J Biol Sci (2011) 7:1016-1026