miRBase entry: bta-mir-3956

Stem-loop bta-mir-3956


Accession
MI0022291
Description
Bos taurus bta-mir-3956 precursor miRNA
Gene family
MIPF0001577; mir-3956


Sequence

245 reads, 16 reads per million, 46 experiments
gccagguACGUGGAUGCUGAAGGUCAGAGGgaagugcuucugucugcacauguguucuccaguccucugaccuuccugcaucccguucaucucuagga
.(((((((((.((((((.(((((((((((((..((((........)))).............)))))))))))))..)))))))))..))))...)).

Structure
g  ---    --   U      -U             -----------aa    uuc 
 cc   aggu  ACG GGAUGC  GAAGGUCAGAGGg             gugc   u
 ||   ||||  ||| ||||||  |||||||||||||             ||||    
 gg   ucua  ugc ccuacg  cuuccagucuccu             cacg   g
a  auc    cu   -      uc             gaccucuugugua    ucu 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr21: 67860482-67860579 [+]
Clustered miRNAs
16 other miRNAs are < 10 kb from bta-mir-3956
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-3956

Accession MIMAT0025544
Description Bos taurus bta-miR-3956 mature miRNA
Sequence 8 - ACGUGGAUGCUGAAGGUCAGAGG - 30
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21912509
    Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
    "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
    "Int J Biol Sci (2011) 7:1016-1026