Stem-loop sequence bta-mir-378c

Accession

MI0022299 (change log)

Description

Bos taurus miR-378c stem-loop

Literature search

24 open access papers mention bta-mir-378c
(103 sentences)

Stem-loop

   caaaacca       ----   u   g   g agu 
5'         ccacugg    acu gga uca a   u
           |||||||    ||| ||| ||| |   c
3'         ggugacc    ugg ucu agu u   c
   aaucguua       ggga   u   g   g gua 

Deep sequencing

599159 reads, 4.71e+03 reads per million, 78 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr24: 31823795-31823863 [-]
• Overlapping transcripts:

  antisense

  ENSBTAT00000048222 ; ZNF521-201; intron 2

Database links

• RNAcentral:URS000075E6C5_9913
• miRBase Tracker:MI0022299

Mature sequence bta-miR-378c

• Accession: MIMAT0025551
• Sequence: 11 - acuggacuuggagucagaagu - 31
• Deep sequencing: 599159 reads, 78 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-378c

References

1. PMID:21912509 "Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle" Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J Int J Biol Sci. 7:1016-1026(2011).