miRBase entry: bta-mir-2285o-5

Stem-loop bta-mir-2285o-5


Accession
MI0022307
Description
Bos taurus bta-mir-2285o-5 precursor miRNA
Gene family
MIPF0000747; mir-2284

Literature search
11 open access papers mention bta-mir-2285o-5
(16 sentences)

Sequence

4655 reads, 14 reads per million, 59 experiments
auuguguuggucaaaagcucauugggguuuuuccgucacauacaggAAACCCGAACGAACUUUUGGgccaacccaa
.(((.((((((((((((.((.((.(((((..(((..........)))))))).)).)).))))).))))))).)))

Structure
a   u       -     c  a  g     uu   guca 
 uug guugguc aaaag uc uu ggguu  ucc    c
 ||| ||||||| ||||| || || |||||  |||     
 aac caaccgG UUUUC AG AA CCCAA  Agg    a
-   c       G     A  C  G     --   acau 


Annotation confidence Not enough data
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Genome context
chr5: 118691013-118691088 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-2285o-5
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-2285o

Accession MIMAT0025530
Description Bos taurus bta-miR-2285o mature miRNA
Sequence 47 - AAACCCGAACGAACUUUUGG - 66
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21912509
    Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
    "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
    "Int J Biol Sci (2011) 7:1016-1026