miRBase entry: gga-mir-6549

Stem-loop gga-mir-6549


Accession
MI0022366
Description
Gallus gallus gga-mir-6549 precursor miRNA

Literature search
1 open access papers mention gga-mir-6549
(1 sentences)

Sequence

25 reads, 0 reads per million, 4 experiments
cucuuggaugguggccuugAGCCUUCUGUUGUGCAUCUGAGAuuccagacagcuuuugucagaucACAGCUGUAAGCAGAAGGCACCCaaggcugccuuccuaugcaccagug
.....(((.((((((((((.((((((((((.((((.(((.((((...((((.....)))).)))).))).))))))))))))))...)))))))))).)))............

Structure
-------cucuu   u          --A          G    U   A    cca    g 
            gga gguggccuug   GCCUUCUGUU UGCA CUG GAuu   gaca c
            ||| ||||||||||   |||||||||| |||| ||| ||||   |||| u
            ccu ccgucggaaC   CGGAAGACGA AUGU GAC cuag   cugu u
gugaccacguau   u          CCA          -    C   A    --a    u 


Annotation confidence Not enough data
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Genome context
chr8: 24565307-24565419 [+]

Database links

Mature gga-miR-6549-5p

Accession MIMAT0025603
Description Gallus gallus gga-miR-6549-5p mature miRNA
Sequence 20 - AGCCUUCUGUUGUGCAUCUGAGA - 42
Evidence experimental
Illumina [1]

Mature gga-miR-6549-3p

Accession MIMAT0025604
Description Gallus gallus gga-miR-6549-3p mature miRNA
Sequence 66 - ACAGCUGUAAGCAGAAGGCACCC - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227