Stem-loop sequence gga-mir-6549

Accession

MI0022366 (change log)

Description

Gallus gallus miR-6549 stem-loop

Literature search

1 open access papers mention gga-mir-6549
(1 sentences)

Stem-loop

   -------cucuu   u  ug      --a          g    u   a    cca       
5'             gga gg  gccuug   gccuucuguu ugca cug gauu   gacagc 
               ||| ||  ||||||   |||||||||| |||| ||| ||||   ||||| u
3'             ccu cc  cggaac   cggaagacga augu gac cuag   cuguuu 
   gugaccacguau   u  gu      cca          -    c   a    --a       

Deep sequencing

26 reads, 0 reads per million, 4 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr8: 24565307-24565419 [+]
• Overlapping transcripts:

  sense

  ENSGALT00000025940 ; intron 1

Database links

• miRBase Tracker:MI0022366

Mature sequence gga-miR-6549-5p

• Accession: MIMAT0025603
• Sequence: 20 - agccuucuguugugcaucugaga - 42
• Deep sequencing: 25 reads, 4 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-6549-5p
  • miRDB:gga-miR-6549-5p

Mature sequence gga-miR-6549-3p

• Accession: MIMAT0025604
• Sequence: 66 - acagcuguaagcagaaggcaccc - 88
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-6549-3p
  • miRDB:gga-miR-6549-3p

References

1. PMID:22418847 "Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation" Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH RNA Biol. 9:212-227(2012).