miRBase entry: gga-mir-6558

Stem-loop gga-mir-6558


Accession
MI0022376
Description
Gallus gallus gga-mir-6558 precursor miRNA


Sequence

cagguguggcaucgcgcugaaauacuguggacacugucgaccAAGUGAAACGUUGAGGUGGCUUGUugaucaaauAGGCCUUCUUGCGUAGCACUUGAauugucagaaaguaagugacuauc
..((((((....))))))........((.(((...))).))((((((..((((.((((.((((((((.....)))))))).))))))))..))))))....((((.........))))....

Structure
cagguguggcaucgcgcugaaauacuguggacacugucgac      AA    U    U        g 
                                         cAAGUG  ACGU GAGG GGCUUGUu a
                                         ||||||  |||| |||| |||||||| u
                                         GUUCAC  UGCG UUCU CCGGAuaa c
----------------cuaucagugaaugaaagacuguuaA      GA    -    U        a 


Annotation confidence Not enough data
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Genome context
chr9: 15205927-15206048 [+]

Database links

Mature gga-miR-6558-5p

Accession MIMAT0025623
Description Gallus gallus gga-miR-6558-5p mature miRNA
Sequence 43 - AAGUGAAACGUUGAGGUGGCUUGU - 66
Evidence experimental
Illumina [1]

Mature gga-miR-6558-3p

Accession MIMAT0025624
Description Gallus gallus gga-miR-6558-3p mature miRNA
Sequence 76 - AGGCCUUCUUGCGUAGCACUUGA - 98
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227