miRBase entry: gga-mir-6587

Stem-loop gga-mir-6587


Accession
MI0022407
Description
Gallus gallus gga-mir-6587 precursor miRNA


Sequence

acgagcuccgaggcacugccccaguUCUCCAGCGCAAACCUCACGCAGgcggagcuuggugagccccUGCUGGAAGUGGUGCUGGAGGCUggagaccugcuauacuuuc
...........((((...(.(((((.(((((((((..((.((..(((((.((..(.....)..)))))))..)).)).)))))))))))))).)...))))........

Structure
acgagcuccga    cug c     U         AA  C  AC     c  ag u 
           ggca   c ccagu CUCCAGCGC  AC UC  GCAGg gg  c u
           ||||   | ||||| |||||||||  || ||  ||||| ||  | g
           ucgu   g ggUCG GAGGUCGUG  UG AG  CGUcc cc  g g
---cuuucaua    cca a     -         -G  A  GU     -  ga u 


Annotation confidence Not enough data
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Genome context
chr5: 26193022-26193130 [-]

Database links

Mature gga-miR-6587-5p

Accession MIMAT0025678
Description Gallus gallus gga-miR-6587-5p mature miRNA
Sequence 26 - UCUCCAGCGCAAACCUCACGCAG - 48
Evidence experimental
Illumina [1]

Mature gga-miR-6587-3p

Accession MIMAT0025679
Description Gallus gallus gga-miR-6587-3p mature miRNA
Sequence 68 - UGCUGGAAGUGGUGCUGGAGGCU - 90
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227