miRBase entry: gga-mir-6612

Stem-loop gga-mir-6612


Accession
MI0022431
Description
Gallus gallus gga-mir-6612 precursor miRNA


Sequence

auguuggugcauacacaucACCACAGGGCACCACCAUGCUGugugugcguucguaucaccaugaggugucacuguguuggugcauacauacaauccugauggggcgccac
....((((((.....(((((.(((((((((((..((((..(((.((((....))))))))))).)))))).))))).)))))...........(((....))))))))).

Structure
augu      ----------------auaca     C     -      AC    CU   u    g 
    uggugc                     caucA CACAG GGCACC  CAUG  Gug gugc u
    ||||||                     ||||| ||||| ||||||  ||||  ||| ||||  
    accgcg                     guggu guguc cugugg  guac  cac uaug u
---c      ggguaguccuaacauacauac     u     a      -a    --   -    c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature gga-miR-6612-5p

Accession MIMAT0025707
Description Gallus gallus gga-miR-6612-5p mature miRNA
Sequence 20 - ACCACAGGGCACCACCAUGCUG - 41
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227