miRBase entry: gga-mir-6652

Stem-loop gga-mir-6652


Accession
MI0022471
Description
Gallus gallus gga-mir-6652 precursor miRNA


Sequence

cucuccaugcccugccugcUGGGUGUAUGUGGGACAGCUCagugcccccacagagggggagagcagccccacaacccccacugggcagcgugacccagccaccagcaaca
.....(((((..((((((.((((.((.((((((.(.((((....(((((.....))))).)))).).)))))))).)))).))))))))))).....((.....))....

Structure
-------------cucuc     cc      c    U  A      A A    agug     a 
                  caugc  ugccug UGGG GU UGUGGG C GCUC    ccccc c
                  |||||  |||||| |||| || |||||| | ||||    ||||| a
                  gugcg  acgggu accc ca acaccc g cgag    ggggg g
acaacgaccaccgaccca     --      c    c  -      c a    ---a     a 


Annotation confidence Not enough data
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Genome context
chr13: 8923374-8923483 [+]

Database links

Mature gga-miR-6652-5p

Accession MIMAT0025752
Description Gallus gallus gga-miR-6652-5p mature miRNA
Sequence 20 - UGGGUGUAUGUGGGACAGCUC - 40
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227