miRBase entry: gga-mir-6682

Stem-loop gga-mir-6682


Accession
MI0022503
Description
Gallus gallus gga-mir-6682 precursor miRNA


Sequence

56 reads, 2 reads per million, 2 experiments
acacaccugugcuuuagugguggcuugccaccuaggaugagccauauguuuauauaaauguuaUGGAACAAAGUAGGUGGCGUGCcacagcagagagcuaggcgugucau
((((.((((.(((((.((.(((((.(((((((((...((..((((((((((....))))).)))))..))...))))))))).))))).))..))))))))).))))...

Structure
---    a    u     -a  g     u         gga  ag     -     a 
   acac ccug gcuuu  gu guggc ugccaccua   ug  ccaua uguuu u
   |||| |||| |||||  || ||||| |||||||||   ||  ||||| |||||  
   ugug ggau cgaga  cg cacCG GCGGUGGAU   AC  GGUau guaaa a
uac    c    -     ga  a     U         GAA  AA     u     u 


Annotation confidence Not enough data
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Genome context
chr4: 21597361-21597470 [+]

Database links

Mature gga-miR-6682-3p

Accession MIMAT0025787
Description Gallus gallus gga-miR-6682-3p mature miRNA
Sequence 64 - UGGAACAAAGUAGGUGGCGUGC - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227