miRBase entry: gga-mir-6543

Stem-loop gga-mir-6543


Accession
MI0022539
Description
Gallus gallus gga-mir-6543 precursor miRNA


Sequence

54 reads, 5 reads per million, 4 experiments
ccauucccuuuuguccuguuGCUGUUACCUGAGAGAAGAUGCUGacucccuccgaccacaGCCUCCUUUCAGGUCACUguaggcagcgcuaaggucuucccugagccu
.................((((((((.(((((((((..((.((((..((.....))...)))).))))))))))).))....))))))(((.(((.....))).)))..

Structure
----ccauucccuuuuguccu      ----  U         AA  U    -ac  c 
                     guuGCU    GU ACCUGAGAG  GA GCUG   uc c
                     ||||||    || |||||||||  || ||||   || u
                     cgacgg    CA UGGACUUUC  CU CGac   ag c
uccgagucccuucuggaaucg      augU  C         --  C    acc  c 


Annotation confidence Low
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Genome context
chr1: 133686509-133686616 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-6543
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-6543-5p

Accession MIMAT0025826
Description Gallus gallus gga-miR-6543-5p mature miRNA
Sequence 21 - GCUGUUACCUGAGAGAAGAUGCUG - 44
Evidence experimental
Illumina [1]

Mature gga-miR-6543-3p

Accession MIMAT0025827
Description Gallus gallus gga-miR-6543-3p mature miRNA
Sequence 61 - GCCUCCUUUCAGGUCACU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227