miRBase entry: ghr-MIR399e

Stem-loop ghr-MIR399e


Accession
MI0022547
Description
Gossypium hirsutum ghr-MIR399e precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
12 open access papers mention ghr-MIR399e
(33 sentences)

Sequence

aaaaaugcaugggugcauuacugggugaaucuccuuuggaaggcaacuaaaacucgguuacauugcauguuggcaugccauguggugggcgacaugcgaugcgaugcuuagcucacUGCCAAAGGAGAUUUGCCCCGcaauucagccaugcaacacg
.....(((((((.((.(((.(.(((((((((((((((((.((....((((...(((....((((((((((((.(..(((....))).).)))))))))))))))...))))....)).))))))))))))))))).).))).)).))))))).....

Structure
aaaaa       g  c   a u                 a  gcaa    aac   guua            g au   a 
     ugcaugg ug auu c gggugaaucuccuuugg ag    cuaa   ucg    cauugcauguug c  gcc u
     ||||||| || ||| | ||||||||||||||||| ||    ||||   |||    |||||||||||| |  |||  
     acguacc ac uaa G CCCGUUUAGAGGAAACC Uc    gauu   agc    guagcguacagc g  ugg g
gcaca       g  u   c C                 G  acuc    cgu   ----            g -g   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ghr-miR399e

Accession MIMAT0025840
Description Gossypium hirsutum ghr-miR399e mature miRNA
Sequence 117 - UGCCAAAGGAGAUUUGCCCCG - 137
Evidence experimental
microarray [1]

References

  1. PubMed ID: 22160515
    Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity
    "Yin Z, Li Y, Yu J, Liu Y, Li C, Han X, Shen F"
    "Mol Biol Rep (2012) 39:4961-4970