miRBase entry: mmu-mir-6940

Stem-loop mmu-mir-6940


Accession
MI0022787
Symbol
MGI: Mir6940
Description
Mus musculus mmu-mir-6940 precursor miRNA


Sequence

32 reads, 8 reads per million, 20 experiments
agaggcAGGGCUGGCUGGAAGGUUUUUCGaggcuggcucagcaccccUUACCUUCCGUGCUUGCCCGCAG
....((.((((.(((((((((((.....(..((((...))))..)....)))))))).))).))))))..

Structure
agag  A    U   -        UUUUC ag    g 
    gc GGGC GGC UGGAAGGU     G  gcug  
    || |||| ||| ||||||||     |  |||| c
    CG CCCG UCG GCCUUCCA     c  cgac  
--GA  -    U   U        -UUcc ca    u 


Annotation confidence Not enough data
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Genome context
chr12: 112733322-112733391 [+]

Database links

Mature mmu-miR-6940-5p

Accession MIMAT0027780
Description Mus musculus mmu-miR-6940-5p mature miRNA
Sequence 7 - AGGGCUGGCUGGAAGGUUUUUCG - 29
Evidence experimental
meta-analysis [1]

Mature mmu-miR-6940-3p

Accession MIMAT0027781
Description Mus musculus mmu-miR-6940-3p mature miRNA
Sequence 48 - UUACCUUCCGUGCUUGCCCGCAG - 70
Evidence experimental
meta-analysis [1]

References

  1. PubMed ID: 22955976
    Discovery of hundreds of mirtrons in mouse and human small RNA data
    "Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC"
    "Genome Res (2012) 22:1634-1645