Stem-loop sequence mmu-mir-7035

Accession

MI0022884 (change log)

Symbol

MGI:Mir7035

Description

Mus musculus miR-7035 stem-loop

Literature search

1 open access papers mention mmu-mir-7035
(3 sentences)

Stem-loop

   ugaggg  u    g             aga ua   gg   u 
5'       gc ggga aguggcucagaag   g  ccu  cuc g
         || |||| |||||||||||||   |  |||  |||  
3'       cg cccu ucgccgagucuuc   c  gga  gag g
   ----ga  u    g             aga gg   ag   g 

Deep sequencing

118 reads, 0 reads per million, 38 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr5: 136105522-136105603 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000062595 ; Rasa4-011; intron 2

  OTTMUST00000062550 ; Rasa4-007; intron 15

  OTTMUST00000062545 ; Rasa4-002; intron 16

  OTTMUST00000062546 ; Rasa4-003; exon 16

  OTTMUST00000062547 ; Rasa4-004; intron 16

  OTTMUST00000062548 ; Rasa4-005; intron 16

  OTTMUST00000062549 ; Rasa4-006; intron 16

  OTTMUST00000062544 ; Rasa4-001; intron 17

  ENSMUST00000122887 ; Rasa4-011; intron 2

  ENSMUST00000140972 ; Rasa4-007; intron 15

  ENSMUST00000134509 ; Rasa4-002; intron 16

  ENSMUST00000125048 ; Rasa4-003; exon 16

  ENSMUST00000135344 ; Rasa4-004; intron 16

  ENSMUST00000152723 ; Rasa4-005; intron 16

  ENSMUST00000100570 ; Rasa4-006; intron 16

  ENSMUST00000042135 ; Rasa4-001; intron 17

Database links

• MGI:Mir7035
• miRBase Tracker:MI0022884

Mature sequence mmu-miR-7035-5p

• Accession: MIMAT0027974
• Sequence: 6 - ggcugggagaguggcucagaa - 26
• Deep sequencing: 39 reads, 20 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-7035-5p
  • miRDB:mmu-miR-7035-5p

Mature sequence mmu-miR-7035-3p

• Accession: MIMAT0027975
• Sequence: 62 - ucugagccgcugucccugcag - 82
• Deep sequencing: 48 reads, 16 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-7035-3p
  • miRDB:mmu-miR-7035-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).