Stem-loop mdm-MIR156o

Accession

MI0022985

Description

Malus domestica mdm-MIR156o precursor miRNA

Literature search

14 open access papers mention mdm-MIR156o
(294 sentences)

Sequence

57203 reads, 14993.0 reads per million, 31 experiments

gacggUGACAGAAGAGAGUGAGCACacaugguauuuucuugcaugcuggguucaugcuugaagcuuugcguGCUUACUCUCUAUCUGUCACCauc
...((((((((((((((((((((((.((.(((...(((..(((((.......)))))..)))))).)).))))))))))))).)))))))))...

Structure

gac         -             a  u   auu   uu     cu 
   ggUGACAGA AGAGAGUGAGCAC ca ggu   uuc  gcaug  g
   ||||||||| ||||||||||||| || |||   |||  |||||  g
   CCACUGUCU UCUCUCAUUCGug gu ucg   aag  cguac  g
cua         A             c  u   ---   uu     uu 

Annotation confidence High

Genome context

MDC011231.822: 32335-32429 [+]

Mature mdm-miR156o-5p

• Accession: MIMAT0025881
• Description: Malus domestica mdm-miR156o-5p mature miRNA
• Sequence: 6 - UGACAGAAGAGAGUGAGCAC - 25
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR156o-3p

• Accession: MIMAT0056580
• Description: Malus domestica mdm-miR156o-3p mature miRNA
• Sequence: 72 - GCUUACUCUCUAUCUGUCACC - 92
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47