Stem-loop sequence mdm-MIR171f

Accession

MI0023047 (change log)

Description

Malus domestica miR171f stem-loop

Gene family

MIPF0000030; MIR171_1

Literature search

9 open access papers mention mdm-MIR171f
(40 sentences)

Stem-loop

       uuga   g        uc         a     a   u    uaaa 
5' cagu    acg gauauugg  cgguucaau agaaa cag gcuc    a
   ||||    ||| ||||||||  ||||||||| ||||| ||| ||||    g
3' guca    ugc cuauaacc  gccgaguua uuuuu guc cgag    u
       -ccg   a        gu         g     c   u    uucg 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: MDC008930.262: 37773-37874 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0023047

Mature sequence mdm-miR171f-5p

• Accession: MIMAT0037467
• Sequence: 12 - ggauauugguccgguucaaua - 32
• Evidence: experimental; Illumina [2]

Mature sequence mdm-miR171f-3p

• Accession: MIMAT0025943
• Sequence: 74 - uugagccgugccaauaucacg - 94
• Evidence: experimental; miRNAseq [1]

References

1. PMID:22704043 "Apple miRNAs and tasiRNAs with novel regulatory networks" Xia R, Zhu H, An YQ, Beers EP, Liu Z Genome Biol. 13:R47(2012).
2. "Identification of apple miRNAs and their potential role in fire blight resistance" Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I Trees Genet Genomes. 11:812(2014).