Stem-loop sequence mdm-MIR172c

Accession

MI0023058 (change log)

Description

Malus domestica miR172c stem-loop

Gene family

MIPF0000035; MIR172

Literature search

15 open access papers mention mdm-MIR172c
(79 sentences)

Stem-loop

        c  u    g g  g                a  -   -   cu    uucua 
5' gguca uu uugc g ug agcaucaucaagauuc ca auc uua  uggg     g
   ||||| || |||| | || |||||||||||||||| || ||| |||  ||||     u
3' ucagu aa aacg c ac ucguaguaguucuaag gu uag agu  accc     u
        a  u    a g  g                a  a   u   uu    caauu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: MDC029091.9: 7611-7725 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0023058

Mature sequence mdm-miR172c

• Accession: MIMAT0025954
• Sequence: 80 - agaaucuugaugaugcugca - 99
• Evidence: experimental; miRNAseq [1]

References

1. PMID:22704043 "Apple miRNAs and tasiRNAs with novel regulatory networks" Xia R, Zhu H, An YQ, Beers EP, Liu Z Genome Biol. 13:R47(2012).