Stem-loop mdm-MIR172e

Accession

MI0023060

Description

Malus domestica mdm-MIR172e precursor miRNA

Literature search

14 open access papers mention mdm-MIR172e
(76 sentences)

Sequence

12527 reads, 1817.0 reads per million, 32 experiments

agucauuguuugcgggugCCGCAUCACCAAGAUUCUUAAgugaguagugugacaugauuuaauugauuuaguuaugccgaucggcucacggaguugAGAAUCUUGAUGAUGCUGCAUcagcgauggaugacu
(((((((..((((.(((((.((((((.((((((((((((((((((....((.(((((((..........))))))).))....))))))....)))))))))))).)))))).))))).))))..)))))))

Structure

       gu    g     C      C            ----      agug  a       uaau 
agucauu  uugc ggugC GCAUCA CAAGAUUCUUAA    gugagu    ug caugauu    u
|||||||  |||| ||||| |||||| ||||||||||||    ||||||    || |||||||     
ucaguag  agcg cUACG CGUAGU GUUCUAAGAguu    cacucg    gc guauuga    g
       gu    a     U      A            gagg      gcua  c       uuua 

Annotation confidence High

Genome context

MDC030881.6: 7973-8104 [+]

Mature mdm-miR172e-5p

• Accession: MIMAT0056642
• Description: Malus domestica mdm-miR172e-5p mature miRNA
• Sequence: 19 - CCGCAUCACCAAGAUUCUUAA - 39
• Evidence: experimental ; unknown

Mature mdm-miR172e-3p

• Accession: MIMAT0025956
• Description: Malus domestica mdm-miR172e-3p mature miRNA
• Sequence: 97 - AGAAUCUUGAUGAUGCUGCAU - 117
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47