Stem-loop mdm-MIR394a

Accession

MI0023082

Description

Malus domestica mdm-MIR394a precursor miRNA

Literature search

3 open access papers mention mdm-MIR394a
(12 sentences)

Sequence

9855 reads, 971.0 reads per million, 32 experiments

ucacguggguuuugcaaagaguuucuuacagaguucuUUGGCAUUCUGUCCACCUCCccccucucucugugugucuguggcucaauggauggAGGUGGGCAUACUGCCAAcagagcucuguuggcuucucuuuguaaaacccccguga
(((((.(((((((((((((((...((.((((((((((((((((...(((((((((((..((........((.(((...))).))..))..)))))))))))...)))))).)))))))))).))...))))))))))))))).)))))

Structure

     u               uuu  u          -      UUC           cc  ucucucug  u   u 
ucacg ggguuuugcaaagag   cu acagaguucu UUGGCA   UGUCCACCUCC  cc        ug guc  
||||| |||||||||||||||   || |||||||||| ||||||   |||||||||||  ||        || ||| g
agugc cccaaaauguuucuc   gg ugucucgaga AACCGU   ACGGGUGGAgg  gg        ac cgg  
     c               uuc  u          c      CAU           ua  ------ua  u   u 

Annotation confidence High

Genome context

MDC016924.31: 605-752 [+]

Mature mdm-miR394a-5p

• Accession: MIMAT0025978
• Description: Malus domestica mdm-miR394a-5p mature miRNA
• Sequence: 38 - UUGGCAUUCUGUCCACCUCC - 57
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR394a-3p

• Accession: MIMAT0056660
• Description: Malus domestica mdm-miR394a-3p mature miRNA
• Sequence: 93 - AGGUGGGCAUACUGCCAA - 110
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47