Stem-loop mdm-MIR396d

Accession

MI0023096

Description

Malus domestica mdm-MIR396d precursor miRNA

Literature search

8 open access papers mention mdm-MIR396d
(37 sentences)

Sequence

480674 reads, 35643.0 reads per million, 32 experiments

gccaugcuuUUCCACAGCUUUCUUGAACUUcaauucumugcugucuaaaucucuuuccggauuagcaccauggaaGCUCAAGAAAGCUGUGGGAGAccauggc
((((((.(((((((((((((((((((.((((.......((((((((............))).))))).....)))).))))))))))))))))))).))))))

Structure

      c                   A    aauucum     -   aaauc 
gccaug uuUUCCACAGCUUUCUUGA CUUc       ugcug ucu     u
|||||| ||||||||||||||||||| ||||       ||||| |||      
cgguac AGAGGGUGUCGAAAGAACU Gaag       acgau agg     c
      c                   C    --guacc     u   ccuuu 

Annotation confidence High

Genome context

MDC016069.205: 8556-8658 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdm-MIR396d

Mature mdm-miR396d-5p

• Accession: MIMAT0025992
• Description: Malus domestica mdm-miR396d-5p mature miRNA
• Sequence: 10 - UUCCACAGCUUUCUUGAACUU - 30
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR396d-3p

• Accession: MIMAT0056670
• Description: Malus domestica mdm-miR396d-3p mature miRNA
• Sequence: 76 - GCUCAAGAAAGCUGUGGGAGA - 96
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47