miRBase entry: ccr-mir-100

Stem-loop ccr-mir-100


Accession
MI0023303
Description
Cyprinus carpio ccr-mir-100 precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
2 open access papers mention ccr-mir-100
(2 sentences)

Sequence

ccugccugcugacacaAACCCGUAGAUCCGAACUUGUggugacuguccacacaagcuuguaucuauagguaucugucuguguggca
..(((((((.((((...(((.((((((.(((.((((((.((......)))))))).))).)))))).)))...)))).))).))))

Structure
cc    -   u    caA   C      C   A      g  ac 
  ugcc ugc gaca   ACC GUAGAU CGA CUUGUg ug  u
  |||| ||| ||||   ||| |||||| ||| |||||| ||   
  acgg gug cugu   ugg uaucua guu gaacac ac  g
--    u   u    cua   a      u   c      -  cu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ccr-miR-100

Accession MIMAT0026195
Description Cyprinus carpio ccr-miR-100 mature miRNA
Sequence 17 - AACCCGUAGAUCCGAACUUGU - 37
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22303472
    Identification and profiling of microRNAs from skeletal muscle of the common carp
    Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
    PLoS One (2012) 7:e30925