miRBase entry: ccr-mir-10b

Stem-loop ccr-mir-10b


Accession
MI0023308
Description
Cyprinus carpio ccr-mir-10b precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
3 open access papers mention ccr-mir-10b
(6 sentences)

Sequence

aaaggccugucaguagucgucuauaugUACCCUGUAGAACCGAAUUUGUguccaaaacaugaaaaucgcaaauacgucucuacaggaauacaugggcgacguaaaagccacg
...(((.........(((((((..(((((.((((((((..((.(((((((................))))))).))..))))))))..))))))))))))......)))...

Structure
aaa   cugucagua       au     -C        AC  A       uccaaaa 
   ggc         gucgucu  augUA  CCUGUAGA  CG AUUUGUg       c
   |||         |||||||  |||||  ||||||||  || |||||||        
   ccg         cagcggg  uacau  ggacaucu  gc uaaacgc       a
gca   ---aaaaug       --     aa        cu  a       uaaaagu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ccr-miR-10b

Accession MIMAT0026200
Description Cyprinus carpio ccr-miR-10b mature miRNA
Sequence 28 - UACCCUGUAGAACCGAAUUUGU - 49
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22303472
    Identification and profiling of microRNAs from skeletal muscle of the common carp
    Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
    PLoS One (2012) 7:e30925