miRBase entry: ccr-mir-16a

Stem-loop ccr-mir-16a


Accession
MI0023339
Description
Cyprinus carpio ccr-mir-16a precursor miRNA
Gene family
MIPF0000006; mir-15

Literature search
1 open access papers mention ccr-mir-16a
(1 sentences)

Sequence

acucuaccucccucgcuuUAGCAGCACGUAAAUAUUGGUGuguuaaagucaaggccagccccaauauugugugugcugcuucagugaggcagg
......(((.(((((((..(((((((((..((((((((.(((((........)))..)).))))))))...)))))))))..))))))).)))

Structure
acucua   c       uU         -UA        U  --   aaa 
      ccu ccucgcu  AGCAGCACG   AAUAUUGG Gu  guu   g
      ||| |||||||  |||||||||   |||||||| ||  |||    
      gga ggaguga  ucgucgugu   uuauaacc cg  cgg   u
------   c       cu         gug        c  ac   aac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ccr-miR-16a

Accession MIMAT0026233
Description Cyprinus carpio ccr-miR-16a mature miRNA
Sequence 19 - UAGCAGCACGUAAAUAUUGGUG - 40
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22303472
    Identification and profiling of microRNAs from skeletal muscle of the common carp
    Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
    PLoS One (2012) 7:e30925