miRBase entry: ccr-mir-221

Stem-loop ccr-mir-221


Accession
MI0023374
Description
Cyprinus carpio ccr-mir-221 precursor miRNA
Gene family
MIPF0000051; mir-221

Literature search
1 open access papers mention ccr-mir-221
(2 sentences)

Sequence

aaagcaagacugaugugguuuugaaccuggcauacaguguagagaucuguguuugucaaauuacAGCUACAUUGUCUGCUGGGuuucagagccgcuucauaacgccgga
...((.....(((.((((((((((((((((((.(((((((((....(((((.((....)).)))))))))))))).))))))).))))))))))).)))....))....

Structure
-aaa  aagac   u           -       u         agau     u  g 
    gc     uga gugguuuugaa ccuggca acaguguag    cugug uu u
    ||     ||| ||||||||||| ||||||| |||||||||    ||||| ||  
    cg     acu cgccgagacuu GGGUCGU UGUUACAUC    GAcau aa c
aggc  -caau   u           u       C         ----     u  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ccr-miR-221

Accession MIMAT0026273
Description Cyprinus carpio ccr-miR-221 mature miRNA
Sequence 65 - AGCUACAUUGUCUGCUGGG - 83
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22303472
    Identification and profiling of microRNAs from skeletal muscle of the common carp
    Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
    PLoS One (2012) 7:e30925