miRBase entry: ccr-mir-727

Stem-loop ccr-mir-727


Accession
MI0023412
Description
Cyprinus carpio ccr-mir-727 precursor miRNA
Gene family
MIPF0001371; mir-727

Literature search
1 open access papers mention ccr-mir-727
(2 sentences)

Sequence

accuguaugucauuuUCAGUCUUCAAUUCCUCCCAGCccguaaccauggaaacugugaGUUGAGGCGAGUUGAAGACUUAaagugcuguacag
..(((((((.((((((.((((((((((((......(((..(((((((((...))))).)))).))))))))))))))).)))))).)))))))

Structure
ac       u      C            CUCCCA   cg    -     a 
  cuguaug cauuuU AGUCUUCAAUUC      GCc  uaac caugg  
  ||||||| |||||| ||||||||||||      |||  |||| ||||| a
  gacaugu gugaaA UCAGAAGUUGAG      CGG  GUUG guguc  
--       c      U            ------   -A    a     a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ccr-miR-727-5p

Accession MIMAT0026314
Description Cyprinus carpio ccr-miR-727-5p mature miRNA
Sequence 16 - UCAGUCUUCAAUUCCUCCCAGC - 37
Evidence experimental
Illumina [1]

Mature ccr-miR-727-3p

Accession MIMAT0026315
Description Cyprinus carpio ccr-miR-727-3p mature miRNA
Sequence 59 - GUUGAGGCGAGUUGAAGACUUA - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22303472
    Identification and profiling of microRNAs from skeletal muscle of the common carp
    Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
    PLoS One (2012) 7:e30925