miRBase entry: ccr-mir-9

Stem-loop ccr-mir-9


Accession
MI0023418
Description
Cyprinus carpio ccr-mir-9 precursor miRNA
Gene family
MIPF0000014; mir-9

Literature search
3 open access papers mention ccr-mir-9
(7 sentences)

Sequence

ggagggguuggcuguuaUCUUUGGUUAUCUAGCUGUAUGaguguuauucauucuucaUAAAGCUAGAUAACCGAAAGUAacaagaauccc
...((((((...((((((.(((((((((((((((.((((((((.....)))...))))).))))))))))))))).))))))..))))))

Structure
gga      ggc      C               G     ---   u 
   gggguu   uguuaU UUUGGUUAUCUAGCU UAUGa   gug u
   ||||||   |||||| ||||||||||||||| |||||   ||| a
   cccuaa   acaAUG AAGCCAAUAGAUCGA AUacu   uac u
---      -ga      A               A     ucu   u 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ccr-miR-9-3p

Accession MIMAT0026321
Description Cyprinus carpio ccr-miR-9-3p mature miRNA
Sequence 18 - UCUUUGGUUAUCUAGCUGUAUG - 39
Evidence experimental
Illumina [1]

Mature ccr-miR-9-5p

Accession MIMAT0026322
Description Cyprinus carpio ccr-miR-9-5p mature miRNA
Sequence 58 - UAAAGCUAGAUAACCGAAAGUA - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22303472
    Identification and profiling of microRNAs from skeletal muscle of the common carp
    Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
    PLoS One (2012) 7:e30925