miRBase entry: osa-MIR818f

Stem-loop osa-MIR818f


Accession
MI0023432
Description
Oryza sativa osa-MIR818f precursor miRNA
Gene family
MIPF0000343; MIR806

Literature search
10 open access papers mention osa-MIR818f
(19 sentences)

Sequence

143 reads, 94 reads per million, 2 experiments
gugggggcaucccucacuguuuucugguaaagaaaaauauaauggauuuugacuuuuucuugcacuguuagaccacucgucuuauuaaaaaaauuuggaauuauuauuuauuuuauuugugacuuacuuuauuauccaaaguacuuuaagcacaacuuuucauuuuuuaauauuuggacaauuuuuuuuaaauaagacgagugguuaaacagugcaaagcaaaaaaucaaaaucccuuauauuacgggauggaGGGAGCAUGUAGGAUGGCCAUgccau
((((((.(((((..((.((((((((..........(((((((.(((((((((.((((((((((((((((.(((((((((((((((((((((((.(((....(((((..........(((((.((((...((((......))))...)))))))))............)))))......))).))))))).)))))))))))))))).)))))))).))).))))).))))))))).))))))).........))))))))))..))))).))...))))

Structure
    ---  g     cu  c        gguaaagaaa       u         c     -   -        a                -       u   --gaau     --uuuauuuuau     a    cuu    au 
gugg   gg caucc  ca uguuuucu          aauauaa ggauuuuga uuuuu cuu gcacuguu gaccacucgucuuauu aaaaaaa uug      uauua            uugug cuua   uauu  c
||||   || |||||  || ||||||||          ||||||| ||||||||| ||||| ||| |||||||| |||||||||||||||| ||||||| |||      |||||            ||||| ||||   ||||   
uacc   CC GUAGG  GU ACGAGGGa          uuauauu ccuaaaacu aaaaa gaa cgugacaa uuggugagcagaauaa uuuuuuu aac      auaau            aacac gaau   auga  c
    gUA  G     AU  -        -gguagggca       c         a     c   a        a                a       u   agguuu     uuuuuacuuuuc     -    uuc    aa 


Annotation confidence Not enough data
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Genome context
Chr8: 18746588-18746866 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR818f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR818f

Accession MIMAT0026335
Description Oryza sativa osa-miR818f mature miRNA
Sequence 254 - GGGAGCAUGUAGGAUGGCCAU - 274
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22158467
    Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
    "Plant Cell (2011) 23:4185-4207