miRBase entry: bma-mir-5843

Stem-loop bma-mir-5843


Accession
MI0023439
Description
Brugia malayi bma-mir-5843 precursor miRNA


Sequence

ucacagagaauggugcguuuaucAUGAGCAACUUUGCCUUCGUUGAggguaauugacaucaacuuggcucugcugcucaagaugacggugcccuucacuuccucu
.......(((.(((((..(((((.((((((.(...(((...(((((.(........).)))))..)))...).)))))).)))))..))))).))).........

Structure
--ucacaga   u     gu     A      A UUU   UUC     g gua 
         gaa ggugc  uuauc UGAGCA C   GCC   GUUGA g   a
         ||| |||||  ||||| |||||| |   |||   ||||| |    
         cuu ccgug  aguag acucgu g   cgg   caacu c   u
ucuccuuca   c     gc     a      c ucu   -uu     a agu 


Annotation confidence Not enough data
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold3: 1001859-1001963 [-]

Database links

Mature bma-miR-5843

Accession MIMAT0026341
Description Brugia malayi bma-miR-5843 mature miRNA
Sequence 24 - AUGAGCAACUUUGCCUUCGUUGA - 46
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498