miRBase entry: bma-mir-5846-1

Stem-loop bma-mir-5846-1

Accession

MI0023442

Description

Brugia malayi bma-mir-5846-1 precursor miRNA

Gene family

MIPF0002109; mir-5846

Sequence

auuugauaugagauggaaguggGUGGAUUCUAGCUUAUUGCUUAagcuuguaaauaggcacaaaguuauaguccacccacuuacaucucauuaaucucgaaaaaugugcc
....(((((((((((..((((((((((((.((((((..((((((..........))))))..)))))).))))))))))))..))))))))..)))..............

Structure

----------auuu   --        ga            C      AU      agcu 
              gau  augagaug  aguggGUGGAUU UAGCUU  UGCUUA    u
              |||  ||||||||  |||||||||||| ||||||  ||||||     
              cua  uacucuac  ucacccaccuga auugaa  acggau    g
ccguguaaaaagcu   au        au            u      ac      aaau

Annotation confidence Not enough data

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Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold1354: 2210-2319 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-5846-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature bma-miR-5846

Accession	MIMAT0026344
Description	Brugia malayi bma-miR-5846 mature miRNA
Sequence	23 - GUGGAUUCUAGCUUAUUGCUUA - 44
Evidence	not_experimental

References

PubMed ID: 22216965
Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
BMC Genomics (2012) 13:4