miRBase entry: bma-mir-5852

Stem-loop bma-mir-5852


Accession
MI0023450
Description
Brugia malayi bma-mir-5852 precursor miRNA


Sequence

gaauuaucuuguucggauuauuaaggagagcaaauguuuuaaggauaAUCUGCUGUUCUUAAUAUUCUGAacaguaaugc
..(((((..((((((((.(((((((((.((((.((..((....))..)).)))).))))))))).)))))))))))))..

Structure
ga     cu        u         g    a  gu  u 
  auuau  uguucgga uauuaagga agca au  uu a
  |||||  |||||||| ||||||||| |||| ||  ||  
  uaaug  acaAGUCU AUAAUUCUU UCGU UA  ag a
cg     --        U         G    C  au  g 


Annotation confidence Not enough data
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold166: 19565-19644 [-]

Database links

Mature bma-miR-5852

Accession MIMAT0026350
Description Brugia malayi bma-miR-5852 mature miRNA
Sequence 48 - AUCUGCUGUUCUUAAUAUUCUGA - 70
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498