miRBase entry: bma-mir-5854

Stem-loop bma-mir-5854


Accession
MI0023452
Description
Brugia malayi bma-mir-5854 precursor miRNA


Sequence

acauacuaucauuucauaauuuauucuaguauuuacagcaagaaguguaAACUAAAAUAGAUUGUGAAAAAUUgauaguguga
.((((((((((((((((((((((((.((((..(((((........))))))))).))))))))))))))...)))))))))).

Structure
a          ---              c    au     gca 
 cauacuauca   uuucauaauuuauu uagu  uuaca   a
 ||||||||||   |||||||||||||| ||||  |||||    
 gugugauagU   AAAGUGUUAGAUAA AUCA  Aaugu   g
a          UAA              A    --     gaa 


Annotation confidence Not enough data
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold60: 178306-178388 [+]

Database links

Mature bma-miR-5854

Accession MIMAT0026352
Description Brugia malayi bma-miR-5854 mature miRNA
Sequence 50 - AACUAAAAUAGAUUGUGAAAAAUU - 73
Evidence not_experimental

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4