miRBase entry: bma-mir-5856b

Stem-loop bma-mir-5856b


Accession
MI0023455
Description
Brugia malayi bma-mir-5856b precursor miRNA
Gene family
MIPF0001503; mir-5856


Sequence

aucaagaagcAACUCCGUGUGUAGCAUUCGGUaugagaguguauaccgaaugcuacacacagaguugcuucuauua
....(((((((((((.(((((((((((((((((((......))))))))))))))))))).)))))))))))....

Structure
auca           C                   ag 
    agaagcAACUC GUGUGUAGCAUUCGGUaug  a
    ||||||||||| |||||||||||||||||||   
    ucuucguugag cacacaucguaagccauau  g
auua           a                   gu 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold2: 198266-198341 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bma-mir-5856b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bma-miR-5856b

Accession MIMAT0026355
Description Brugia malayi bma-miR-5856b mature miRNA
Sequence 11 - AACUCCGUGUGUAGCAUUCGGU - 32
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498