miRBase entry: bma-mir-5863

Stem-loop bma-mir-5863


Accession
MI0023464
Description
Brugia malayi bma-mir-5863 precursor miRNA


Sequence

accggcgguuggaagggugccggGCCAGACUGUACUGCGUCACAGucuucuucuuccaugacuggaacgcguauuguucgagaacgccugaaauauauuuauucaag
.((((((.((....)).))))))....(((.((((.((((..(((((............)))))..)))))))).)))..........((((.((....))))))..

Structure
--accggcgguuggaagggugccggGCCA   U    U    CA     uucuu 
                             GAC GUAC GCGU  CAGuc     c
                             ||| |||| ||||  |||||      
                             uug uaug cgca  gucag     u
gaacuuauuuauauaaaguccgcaagagc   u    -    ag     uaccu 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold12: 622038-622144 [+]

Database links

Mature bma-miR-5863

Accession MIMAT0026362
Description Brugia malayi bma-miR-5863 mature miRNA
Sequence 24 - GCCAGACUGUACUGCGUCACAG - 45
Evidence not_experimental

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4