miRBase entry: bma-mir-5864

Stem-loop bma-mir-5864


Accession
MI0023466
Description
Brugia malayi bma-mir-5864 precursor miRNA


Sequence

auucgggguucgauucuuggguguaccagugaugaaaugacguuaaucugcuguucacguagugaucauacguuUGAAGUGAACGUUUGUCAUAAGUCUGAGGUCGuaucauccagggagauucauuc
.....(((((...((((((((((((((((..((((...((((((....((((....(((((.......)))))....))))))))))..))))....))).....))).)))))))))))))))....

Structure
auucg     cga          -   -----   --ug    aau      aauc    guuc     gu 
     ggguu   uucuugggug uac     cag    auga   gacguu    ugcu    acgua  g
     |||||   |||||||||| |||     |||    ||||   ||||||    ||||    |||||  a
     cuuag   agggaccuac auG     GUC    UACU   UUGCAA    GUGA    ugcau  u
-cuua     ---          u   CUGGA   UGAA    -GU      ----    AGUu     ac 


Annotation confidence Not enough data
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold152: 66233-66360 [+]

Database links

Mature bma-miR-5864

Accession MIMAT0026363
Description Brugia malayi bma-miR-5864 mature miRNA
Sequence 75 - UGAAGUGAACGUUUGUCAUAAGUCUGAGGUCG - 106
Evidence not_experimental

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4