miRBase entry: bma-mir-2e

Stem-loop bma-mir-2e


Accession
MI0023472
Description
Brugia malayi bma-mir-2e precursor miRNA

Literature search
3 open access papers mention bma-mir-2e
(29 sentences)

Sequence

cuuaaaauauugguuuucggaucaccugaauugaauugugauauguuacuauuuucuuaucaUAUCACAGUACUAUUCCGGGCAUccgugaaacaauuuacuuaaugu
........((((..((.(((((..((.((((.(.(((((((((((...............))))))))))).).)))).))..))))).))..))))...........

Structure
---cuuaaaau    gu  u     ca  u    u a           uuacua 
           auug  uu cggau  cc gaau g auugugauaug      u
           ||||  || |||||  || |||| | |||||||||||      u
           uaac  ag gccUA  GG CUUA C UGACACUAUac      u
uguaauucauu    aa  u     CG  C    U A           uauucu 


Annotation confidence Not enough data
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold199: 29087-29194 [-]

Database links

Mature bma-miR-2e

Accession MIMAT0026369
Description Brugia malayi bma-miR-2e mature miRNA
Sequence 63 - UAUCACAGUACUAUUCCGGGCAU - 85
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498