miRBase entry: bma-mir-5875

Stem-loop bma-mir-5875


Accession
MI0023484
Description
Brugia malayi bma-mir-5875 precursor miRNA


Sequence

uuugucuuuuAGUGCAAGUAUGACAGUUUGCAUGcauaugcauaugcaugcaaacugucaucaagcaugcauuacaug
.........(((((((.(((((((((((((((((((((....)))))))))))))))))))...)).)))))))....

Structure
uuugucuuu       A  ---                   u 
         uAGUGCA GU   AUGACAGUUUGCAUGcaua g
         ||||||| ||   |||||||||||||||||||  
         auuacgu cg   uacugucaaacguacguau c
-----guac       a  aac                   a 


Annotation confidence Not enough data
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold69: 172889-172966 [+]

Database links

Mature bma-miR-5875

Accession MIMAT0026374
Description Brugia malayi bma-miR-5875 mature miRNA
Sequence 11 - AGUGCAAGUAUGACAGUUUGCAUG - 34
Evidence not_experimental

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4