miRBase entry: bma-mir-5880a

Stem-loop bma-mir-5880a

Accession

MI0023491

Description

Brugia malayi bma-mir-5880a precursor miRNA

Gene family

MIPF0001483; mir-5880

Sequence

gauguccaaguuugaucuaacaaauuaccgacgugugcaaaaacuguuACAUCGGUAACUUGUUAGGUCAAAcuuggacacg
..(((((((((((((((((((((.(((((((.(((.(((.....)))))).))))))).)))))))))))))))))))))..

Structure

ga                     a       c   u   a 
  uguccaaguuugaucuaacaa uuaccga gug gca a
  ||||||||||||||||||||| ||||||| ||| ||| a
  acagguucAAACUGGAUUGUU AAUGGCU CAu ugu a
gc                     C       A   -   c

Annotation confidence Not enough data

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Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold24: 278001-278082 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-5880a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature bma-miR-5880a

Accession	MIMAT0026380
Description	Brugia malayi bma-miR-5880a mature miRNA
Sequence	49 - ACAUCGGUAACUUGUUAGGUCAAA - 72
Evidence	not_experimental

References

PubMed ID: 22216965
Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
BMC Genomics (2012) 13:4