miRBase entry: bma-mir-5881b

Stem-loop bma-mir-5881b


Accession
MI0023494
Description
Brugia malayi bma-mir-5881b precursor miRNA
Gene family
MIPF0001420; mir-5881


Sequence

cuugcagaguuuaggauugaaauuAGGACAACUACGACACUAAGGGcgacuuuugcgcccuuagugucguaguuguccgauuuuaaguuacuuccauauuuua
......((((......((((((((.(((((((((((((((((((((((.(....))))))))))))))))))))))))))))))))...))))..........

Structure
----cuugca    uuagga        A                       a u 
          gagu      uugaaauu GGACAACUACGACACUAAGGGcg c u
          ||||      |||||||| ||||||||||||||||||||||| |  
          uuca      aauuuuag ccuguugaugcugugauucccgc g u
auuuuauacc    ---uug        -                       - u 


Annotation confidence Not enough data
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold4: 1450454-1450556 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bma-mir-5881b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bma-miR-5881b

Accession MIMAT0026383
Description Brugia malayi bma-miR-5881b mature miRNA
Sequence 25 - AGGACAACUACGACACUAAGGG - 46
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498