Stem-loop sbi-MIR5568b

Accession

MI0023512

Description

Sorghum bicolor sbi-MIR5568b precursor miRNA

Gene family

MIPF0001377; MIR5568

Literature search

2 open access papers mention sbi-MIR5568b
(3 sentences)

Sequence

acagguuuaaucaaauuaucuaguauguacucccucuauuccaaauuguaagucauuuaaacuUUUCUAGGUACAUAGCUUUUGcuaugcaucuauagcuacauaguuuuuACUAUGUAUCUAGAAAAGCUAgaacaaauuacaauuucaaacagaguagcauuuaauuauauacuauuuuugacaccaugu
((((((....(((((.....(((((((((((..((((.((..(((((((((..........(((((((((((((((((.....((((((............)))))).....)))))))))))))))))..........)))))))))..)).)))).))........)))))))))..))))).))).)))

Structure

   -   uuaa     uuauc         --------  cc    a  cc         gucauuuaaa                 CUUUU      caucu 
aca ggu    ucaaa     uaguaugua        cu  cucu uu  aaauuguaa          cuUUUCUAGGUACAUAG     Gcuaug     a
||| |||    |||||     |||||||||        ||  |||| ||  |||||||||          |||||||||||||||||     ||||||      
ugu cca    aguuu     aucauauau        ga  gaga aa  uuuaacauu          GAAAAGAUCUAUGUAUC     ugauac     u
   a   ---c     ---uu         uaauuuac  -u    c  ac         aaacaagAUC                 Auuuu      aucga 

Annotation confidence Not enough data

Genome context

chr6: 46400021-46400212 [-]

Mature sbi-miR5568b-5p

• Accession: MIMAT0026388
• Description: Sorghum bicolor sbi-miR5568b-5p mature miRNA
• Sequence: 64 - UUUCUAGGUACAUAGCUUUUG - 84
• Evidence: not_experimental

Mature sbi-miR5568b-3p

• Accession: MIMAT0026389
• Description: Sorghum bicolor sbi-miR5568b-3p mature miRNA
• Sequence: 112 - ACUAUGUAUCUAGAAAAGCUA - 132
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290