Stem-loop sbi-MIR6221

Accession

MI0023517

Description

Sorghum bicolor sbi-MIR6221 precursor miRNA

Literature search

1 open access papers mention sbi-MIR6221
(2 sentences)

Sequence

acagcucaccagcccauccuuaugcguggugcUUCUGACUUCUGGCCCCUGCUcagccccaccaacacuaagCCGGGGCCAGAUCUCAGAAGCauugugcauaaucaugugccucuagcugu
((((((.....((.(((..(((((((((((((((((((..(((((((((.(((.((...........)).))).)))))))))..)))))))))))))))))))..))).))....))))))

Structure

      cacca  c   cc                   CU         U   c  cccc 
acagcu     gc cau  uuaugcguggugcUUCUGA  UCUGGCCCC GCU ag    a
||||||     || |||  |||||||||||||||||||  ||||||||| ||| ||    c
ugucga     cg gua  aauacguguuaCGAAGACU  AGACCGGGG Cga uc    c
      -ucuc  u   cu                   CU         C   a  acaa 

Annotation confidence Not enough data

Genome context

chr1: 17576988-17577109 [-]

Mature sbi-miR6221-5p

• Accession: MIMAT0026408
• Description: Sorghum bicolor sbi-miR6221-5p mature miRNA
• Sequence: 33 - UUCUGACUUCUGGCCCCUGCU - 53
• Evidence: not_experimental

Mature sbi-miR6221-3p

• Accession: MIMAT0026409
• Description: Sorghum bicolor sbi-miR6221-3p mature miRNA
• Sequence: 73 - CCGGGGCCAGAUCUCAGAAGC - 93
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290