Stem-loop sbi-MIR5568d

Accession

MI0023524

Description

Sorghum bicolor sbi-MIR5568d precursor miRNA

Gene family

MIPF0001377; MIR5568

Literature search

2 open access papers mention sbi-MIR5568d
(3 sentences)

Sequence

cacccucugucccaaauuguaggucguuuUGGCUUUUCUAGAUACAUAGCuuuugcuaugcacuuagauauaugauacaucuagauacauaauaAAAGUUGUGUAUCUAGAAAAGccaaaacgaccuguaaaauugaacggagggug
((((((((((..(((.(((((((((((((((((((((((((((((((((((((((.((((...((((((.........))))))...)))).)))))))))))))))))))))))))))))))))))))))..))).))))))))))

Structure

          cc   -a                                       c    cac      aua 
cacccucugu  caa  uuguaggucguuuUGGCUUUUCUAGAUACAUAGCuuuug uaug   uuagau   u
||||||||||  |||  ||||||||||||||||||||||||||||||||||||||| ||||   ||||||   g
gugggaggca  guu  aauguccagcaaaaccGAAAAGAUCUAUGUGUUGAAAau auac   gaucua   a
          -a   aa                                       a    aua      cau 

Annotation confidence Not enough data

Genome context

chr3: 65618892-65619038 [+]

Mature sbi-miR5568d-5p

• Accession: MIMAT0026422
• Description: Sorghum bicolor sbi-miR5568d-5p mature miRNA
• Sequence: 30 - UGGCUUUUCUAGAUACAUAGC - 50
• Evidence: not_experimental

Mature sbi-miR5568d-3p

• Accession: MIMAT0026423
• Description: Sorghum bicolor sbi-miR5568d-3p mature miRNA
• Sequence: 95 - AAAGUUGUGUAUCUAGAAAAG - 115
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290