miRBase entry: sbi-MIR5568e

Stem-loop sbi-MIR5568e


Accession
MI0023532
Description
Sorghum bicolor sbi-MIR5568e precursor miRNA
Gene family
MIPF0001377; MIR5568

Literature search
2 open access papers mention sbi-MIR5568e
(3 sentences)

Sequence

uauuuuacuaccuccauuccuauuuauaaGAUGUUUUGGGUUUUCUAGAUauauaucucuugcuauguacuuggauauauacauuacgucuagaaacauaguaaaaccagugugUAUCUAGAAAAGCUAAAACGUguauaauuugaaauagagggaguacuaua
.....((((.((((.(((.(...(((((..(((((((((.((((((((((((((((...(((((((((..((((((.((.....)).))))))..))))))))).....)))))))))))))))).))))))))).)))))...).))).)))).)))).....

Structure
uauuu    a    c   c uau     aG         G                --cuc         ac      a  u 
     uacu ccuc auu c   uuaua  AUGUUUUGG UUUUCUAGAUauauau     uugcuaugu  uuggau ua a
     |||| |||| ||| |   |||||  ||||||||| ||||||||||||||||     |||||||||  |||||| || c
     auga ggag uaa g   aauau  UGCAAAAUC AAAAGAUCUAUgugug     aaugauaca  gaucug au a
auauc    g    a   a uuu     -g         G                accaa         aa      c  u 


Annotation confidence Not enough data
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Genome context
chr9: 4815913-4816076 [+]

Database links

Mature sbi-miR5568e-5p

Accession MIMAT0026438
Description Sorghum bicolor sbi-miR5568e-5p mature miRNA
Sequence 30 - GAUGUUUUGGGUUUUCUAGAU - 50
Evidence not_experimental

Mature sbi-miR5568e-3p

Accession MIMAT0026439
Description Sorghum bicolor sbi-miR5568e-3p mature miRNA
Sequence 115 - UAUCUAGAAAAGCUAAAACGU - 135
Evidence not_experimental

References

  1. PubMed ID: 22747909
    Computational identification and analysis of novel sugarcane microRNAs
    Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
    BMC Genomics (2012) 13:290