miRBase entry: gga-mir-6648-2

Stem-loop gga-mir-6648-2


Accession
MI0023555
Description
Gallus gallus gga-mir-6648-2 precursor miRNA
Gene family
MIPF0001557; mir-6648


Sequence

188 reads, 4 reads per million, 5 experiments
gcggaggcuacggggguaaAGGAGCGUUCAGAAUGCCGGUGgcagcugcccUCCGGCAUUCUGAACGCUCCUuuacgcagggugauuggggcuggugag
((...((.(((..(.((((((((((((((((((((((((.(((....)))..)))))))))))))))))))))))).)...))).))...)).......

Structure
-------  gga  c   -gg g                        -U   a 
       gc   gg uac   g guaaAGGAGCGUUCAGAAUGCCGG  Ggc g
       ||   || |||   | ||||||||||||||||||||||||  |||  
       cg   uu gug   c cauuUCCUCGCAAGUCUUACGGCC  ccg c
gaguggu  ggg  a   gga g                        Uc   u 


Annotation confidence Not enough data
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Genome context
KQ759460.1: 17716-17814 [-]

Database links

Mature gga-miR-6648-5p

Accession MIMAT0025746
Description Gallus gallus gga-miR-6648-5p mature miRNA
Sequence 20 - AGGAGCGUUCAGAAUGCCGGUG - 41
Evidence experimental
Illumina [1]

Mature gga-miR-6648-3p

Accession MIMAT0025747
Description Gallus gallus gga-miR-6648-3p mature miRNA
Sequence 52 - UCCGGCAUUCUGAACGCUCCU - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227